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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        This report was generated using MultiQC, version 1.14

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2023-09-05, 16:09 PDT based on data in: /vol08/ngs/Seattle_Genomics/Collaborations/SG_Watkins/Watkins_07_WB/SawatzkiAnalysis/trimgalore_results/trimgalore_fastqc_results


        General Statistics

        Showing 490/490 rows and 3/6 columns.
        Sample Name% Dups% GCM Seqs
        G209_Watkins07_AVR_r08014_B_D168_RNA1_Lib1_GL105_S60_R1_001_val_1
        66.1%
        48%
        60.4
        G209_Watkins07_AVR_r08014_B_D168_RNA1_Lib1_GL105_S60_R2_001_val_2
        65.3%
        49%
        60.4
        G210_Watkins07_AVR_r14065_B_D168_RNA2_Lib1_GL104_S2_R1_001_val_1
        56.0%
        48%
        38.7
        G210_Watkins07_AVR_r14065_B_D168_RNA2_Lib1_GL104_S2_R2_001_val_2
        57.8%
        49%
        38.7
        G211_Watkins07_AVR_r16007_B_D168_RNA1_Lib1_GL102_S105_R1_001_val_1
        58.2%
        47%
        51.9
        G211_Watkins07_AVR_r16007_B_D168_RNA1_Lib1_GL102_S105_R2_001_val_2
        55.1%
        48%
        51.9
        G212_Watkins07_AVR_r17017_B_D168_RNA1_Lib1_GL102_S86_R1_001_val_1
        58.0%
        48%
        42.1
        G212_Watkins07_AVR_r17017_B_D168_RNA1_Lib1_GL102_S86_R2_001_val_2
        56.6%
        49%
        42.1
        G213_Watkins07_AVR_r17115_B_D168_RNA1_Lib1_GL104_S25_R1_001_val_1
        51.4%
        47%
        35.9
        G213_Watkins07_AVR_r17115_B_D168_RNA1_Lib1_GL104_S25_R2_001_val_2
        54.0%
        48%
        35.9
        G214_Watkins07_AVR_rh2932_B_D168_RNA1_Lib1_GL102_S7_R1_001_val_1
        61.4%
        49%
        39.8
        G214_Watkins07_AVR_rh2932_B_D168_RNA1_Lib1_GL102_S7_R2_001_val_2
        59.8%
        50%
        39.8
        G215_Watkins07_AVR_rh2943_B_D168_RNA1_Lib1_GL104_S42_R1_001_val_1
        54.8%
        48%
        35.8
        G215_Watkins07_AVR_rh2943_B_D168_RNA1_Lib1_GL104_S42_R2_001_val_2
        57.8%
        49%
        35.8
        G216_Watkins07_AVR_rh3006_B_D168_RNA1_Lib1_GL102_S11_R1_001_val_1
        58.1%
        49%
        37.2
        G216_Watkins07_AVR_rh3006_B_D168_RNA1_Lib1_GL102_S11_R2_001_val_2
        55.8%
        50%
        37.2
        G217_Watkins07_AVR_rh3011_B_D168_RNA1_Lib1_GL102_S31_R1_001_val_1
        63.7%
        49%
        49.0
        G217_Watkins07_AVR_rh3011_B_D168_RNA1_Lib1_GL102_S31_R2_001_val_2
        62.0%
        50%
        49.0
        G218_Watkins07_AVR_rh3032_B_D168_RNA1_Lib1_GL102_S62_R1_001_val_1
        54.6%
        48%
        35.7
        G218_Watkins07_AVR_rh3032_B_D168_RNA1_Lib1_GL102_S62_R2_001_val_2
        52.1%
        49%
        35.7
        G219_Watkins07_AVR_rh3033_B_D168_RNA1_Lib1_GL104_S51_R1_001_val_1
        53.3%
        47%
        41.7
        G219_Watkins07_AVR_rh3033_B_D168_RNA1_Lib1_GL104_S51_R2_001_val_2
        56.1%
        48%
        41.7
        G220_Watkins07_AVR_rh3036_B_D168_RNA1_Lib1_GL104_S50_R1_001_val_1
        54.6%
        48%
        37.3
        G220_Watkins07_AVR_rh3036_B_D168_RNA1_Lib1_GL104_S50_R2_001_val_2
        57.8%
        49%
        37.3
        G221_Watkins07_AVR_rh3037_B_D168_RNA1_Lib1_GL105_S57_R1_001_val_1
        56.4%
        48%
        45.4
        G221_Watkins07_AVR_rh3037_B_D168_RNA1_Lib1_GL105_S57_R2_001_val_2
        54.4%
        48%
        45.4
        G222_Watkins07_AVR_rh3045_B_D168_RNA1_Lib1_GL102_S4_R1_001_val_1
        51.7%
        48%
        36.4
        G222_Watkins07_AVR_rh3045_B_D168_RNA1_Lib1_GL102_S4_R2_001_val_2
        48.8%
        49%
        36.4
        G223_Watkins07_AVR_rh3048_B_D168_RNA1_Lib1_GL104_S53_R1_001_val_1
        54.0%
        48%
        45.5
        G223_Watkins07_AVR_rh3048_B_D168_RNA1_Lib1_GL104_S53_R2_001_val_2
        57.2%
        48%
        45.5
        G224_Watkins07_AVR_rh3053_B_D168_RNA1_Lib1_GL104_S23_R1_001_val_1
        48.6%
        48%
        34.3
        G224_Watkins07_AVR_rh3053_B_D168_RNA1_Lib1_GL104_S23_R2_001_val_2
        51.4%
        48%
        34.3
        G225_Watkins07_AVR_r08014_B_D196_RNA1_Lib1_GL104_S96_R1_001_val_1
        55.9%
        47%
        43.1
        G225_Watkins07_AVR_r08014_B_D196_RNA1_Lib1_GL104_S96_R2_001_val_2
        57.3%
        48%
        43.1
        G226_Watkins07_AVR_r14065_B_D196_RNA1_Lib1_GL104_S102_R1_001_val_1
        63.7%
        48%
        50.1
        G226_Watkins07_AVR_r14065_B_D196_RNA1_Lib1_GL104_S102_R2_001_val_2
        65.6%
        48%
        50.1
        G227_Watkins07_AVR_r16007_B_D196_RNA1_Lib1_GL102_S77_R1_001_val_1
        56.8%
        48%
        38.2
        G227_Watkins07_AVR_r16007_B_D196_RNA1_Lib1_GL102_S77_R2_001_val_2
        54.7%
        49%
        38.2
        G228_Watkins07_AVR_r17017_B_D196_RNA1_Lib1_GL105_S70_R1_001_val_1
        54.6%
        47%
        43.7
        G228_Watkins07_AVR_r17017_B_D196_RNA1_Lib1_GL105_S70_R2_001_val_2
        52.7%
        48%
        43.7
        G229_Watkins07_AVR_r17115_B_D196_RNA1_Lib1_GL104_S105_R1_001_val_1
        52.4%
        47%
        42.5
        G229_Watkins07_AVR_r17115_B_D196_RNA1_Lib1_GL104_S105_R2_001_val_2
        54.4%
        48%
        42.5
        G230_Watkins07_AVR_rh2932_B_D196_RNA1_Lib1_GL102_S32_R1_001_val_1
        63.8%
        48%
        41.6
        G230_Watkins07_AVR_rh2932_B_D196_RNA1_Lib1_GL102_S32_R2_001_val_2
        62.2%
        49%
        41.6
        G231_Watkins07_AVR_rh2943_B_D196_RNA1_Lib1_GL105_S96_R1_001_val_1
        58.4%
        47%
        53.4
        G231_Watkins07_AVR_rh2943_B_D196_RNA1_Lib1_GL105_S96_R2_001_val_2
        55.8%
        47%
        53.4
        G232_Watkins07_AVR_rh3006_B_D196_RNA1_Lib1_GL105_S79_R1_001_val_1
        57.6%
        48%
        47.8
        G232_Watkins07_AVR_rh3006_B_D196_RNA1_Lib1_GL105_S79_R2_001_val_2
        54.0%
        48%
        47.8
        G233_Watkins07_AVR_rh3011_B_D196_RNA1_Lib1_GL105_S73_R1_001_val_1
        60.7%
        49%
        50.0
        G233_Watkins07_AVR_rh3011_B_D196_RNA1_Lib1_GL105_S73_R2_001_val_2
        59.3%
        49%
        50.0
        G234_Watkins07_AVR_rh3032_B_D196_RNA1_Lib1_GL104_S22_R1_001_val_1
        52.2%
        48%
        35.5
        G234_Watkins07_AVR_rh3032_B_D196_RNA1_Lib1_GL104_S22_R2_001_val_2
        54.0%
        49%
        35.5
        G235_Watkins07_AVR_rh3033_B_D196_RNA1_Lib1_GL104_S85_R1_001_val_1
        52.2%
        47%
        36.8
        G235_Watkins07_AVR_rh3033_B_D196_RNA1_Lib1_GL104_S85_R2_001_val_2
        53.2%
        47%
        36.8
        G236_Watkins07_AVR_rh3036_B_D196_RNA1_Lib1_GL102_S37_R1_001_val_1
        56.1%
        48%
        39.1
        G236_Watkins07_AVR_rh3036_B_D196_RNA1_Lib1_GL102_S37_R2_001_val_2
        53.0%
        49%
        39.1
        G237_Watkins07_AVR_rh3037_B_D196_RNA1_Lib1_GL102_S68_R1_001_val_1
        53.1%
        48%
        33.5
        G237_Watkins07_AVR_rh3037_B_D196_RNA1_Lib1_GL102_S68_R2_001_val_2
        50.8%
        49%
        33.5
        G238_Watkins07_AVR_rh3045_B_D196_RNA1_Lib1_GL104_S91_R1_001_val_1
        51.1%
        47%
        41.8
        G238_Watkins07_AVR_rh3045_B_D196_RNA1_Lib1_GL104_S91_R2_001_val_2
        53.5%
        48%
        41.8
        G239_Watkins07_AVR_rh3048_B_D196_RNA1_Lib1_GL102_S79_R1_001_val_1
        55.6%
        48%
        35.8
        G239_Watkins07_AVR_rh3048_B_D196_RNA1_Lib1_GL102_S79_R2_001_val_2
        54.2%
        49%
        35.8
        G240_Watkins07_AVR_rh3053_B_D196_RNA1_Lib1_GL102_S18_R1_001_val_1
        51.6%
        48%
        32.5
        G240_Watkins07_AVR_rh3053_B_D196_RNA1_Lib1_GL102_S18_R2_001_val_2
        48.5%
        49%
        32.5
        G241_Watkins07_AVR_r08014_B_D224_RNA1_Lib1_GL105_S98_R1_001_val_1
        61.7%
        48%
        48.0
        G241_Watkins07_AVR_r08014_B_D224_RNA1_Lib1_GL105_S98_R2_001_val_2
        58.1%
        48%
        48.0
        G242_Watkins07_AVR_r14065_B_D224_RNA1_Lib1_GL102_S54_R1_001_val_1
        56.2%
        49%
        33.8
        G242_Watkins07_AVR_r14065_B_D224_RNA1_Lib1_GL102_S54_R2_001_val_2
        54.0%
        50%
        33.8
        G243_Watkins07_AVR_r16007_B_D224_RNA1_Lib1_GL102_S33_R1_001_val_1
        52.6%
        48%
        33.7
        G243_Watkins07_AVR_r16007_B_D224_RNA1_Lib1_GL102_S33_R2_001_val_2
        50.5%
        49%
        33.7
        G244_Watkins07_AVR_r17017_B_D224_RNA2_Lib1_GL102_S100_R1_001_val_1
        56.7%
        47%
        47.0
        G244_Watkins07_AVR_r17017_B_D224_RNA2_Lib1_GL102_S100_R2_001_val_2
        54.2%
        48%
        47.0
        G245_Watkins07_AVR_r17115_B_D224_RNA1_Lib1_GL102_S59_R1_001_val_1
        56.3%
        48%
        35.3
        G245_Watkins07_AVR_r17115_B_D224_RNA1_Lib1_GL102_S59_R2_001_val_2
        54.0%
        49%
        35.3
        G246_Watkins07_AVR_rh2932_B_D224_RNA1_Lib1_GL102_S2_R1_001_val_1
        61.7%
        48%
        37.7
        G246_Watkins07_AVR_rh2932_B_D224_RNA1_Lib1_GL102_S2_R2_001_val_2
        58.9%
        48%
        37.7
        G247_Watkins07_AVR_rh2943_B_D224_RNA1_Lib1_GL104_S82_R1_001_val_1
        53.4%
        48%
        31.3
        G247_Watkins07_AVR_rh2943_B_D224_RNA1_Lib1_GL104_S82_R2_001_val_2
        55.3%
        48%
        31.3
        G248_Watkins07_AVR_rh3006_B_D224_RNA1_Lib1_GL102_S22_R1_001_val_1
        61.3%
        49%
        42.0
        G248_Watkins07_AVR_rh3006_B_D224_RNA1_Lib1_GL102_S22_R2_001_val_2
        59.9%
        49%
        42.0
        G249_Watkins07_AVR_rh3011_B_D224_RNA1_Lib1_GL102_S53_R1_001_val_1
        57.7%
        49%
        36.2
        G249_Watkins07_AVR_rh3011_B_D224_RNA1_Lib1_GL102_S53_R2_001_val_2
        56.9%
        50%
        36.2
        G250_Watkins07_AVR_rh3032_B_D224_RNA1_Lib1_GL102_S84_R1_001_val_1
        55.4%
        48%
        40.9
        G250_Watkins07_AVR_rh3032_B_D224_RNA1_Lib1_GL102_S84_R2_001_val_2
        53.3%
        49%
        40.9
        G251_Watkins07_AVR_rh3033_B_D224_RNA1_Lib1_GL102_S72_R1_001_val_1
        57.4%
        48%
        42.8
        G251_Watkins07_AVR_rh3033_B_D224_RNA1_Lib1_GL102_S72_R2_001_val_2
        55.2%
        49%
        42.8
        G252_Watkins07_AVR_rh3036_B_D224_RNA1_Lib1_GL104_S3_R1_001_val_1
        55.3%
        48%
        49.0
        G252_Watkins07_AVR_rh3036_B_D224_RNA1_Lib1_GL104_S3_R2_001_val_2
        59.6%
        49%
        49.0
        G253_Watkins07_AVR_rh3037_B_D224_RNA1_Lib1_GL104_S5_R1_001_val_1
        54.6%
        47%
        41.8
        G253_Watkins07_AVR_rh3037_B_D224_RNA1_Lib1_GL104_S5_R2_001_val_2
        57.6%
        47%
        41.8
        G254_Watkins07_AVR_rh3045_B_D224_RNA1_Lib1_GL102_S52_R1_001_val_1
        56.0%
        48%
        32.9
        G254_Watkins07_AVR_rh3045_B_D224_RNA1_Lib1_GL102_S52_R2_001_val_2
        53.3%
        49%
        32.9
        G255_Watkins07_AVR_rh3048_B_D224_RNA1_Lib1_GL102_S23_R1_001_val_1
        57.5%
        49%
        30.6
        G255_Watkins07_AVR_rh3048_B_D224_RNA1_Lib1_GL102_S23_R2_001_val_2
        55.2%
        50%
        30.6
        G256_Watkins07_AVR_rh3053_B_D224_RNA1_Lib1_GL102_S12_R1_001_val_1
        50.4%
        48%
        31.7
        G256_Watkins07_AVR_rh3053_B_D224_RNA1_Lib1_GL102_S12_R2_001_val_2
        47.4%
        49%
        31.7
        G257_Watkins07_AVR_r08014_B_D0-SIV_RNA1_Lib1_GL105_S85_R1_001_val_1
        63.2%
        47%
        51.6
        G257_Watkins07_AVR_r08014_B_D0-SIV_RNA1_Lib1_GL105_S85_R2_001_val_2
        61.4%
        48%
        51.6
        G258_Watkins07_Unvax_r15058_B_D0-SIV_RNA1_Lib1_GL104_S74_R1_001_val_1
        53.6%
        48%
        38.5
        G258_Watkins07_Unvax_r15058_B_D0-SIV_RNA1_Lib1_GL104_S74_R2_001_val_2
        55.7%
        48%
        38.5
        G259_Watkins07_Unvax_r16003_B_D0-SIV_RNA1_Lib1_GL104_S94_R1_001_val_1
        60.4%
        48%
        49.1
        G259_Watkins07_Unvax_r16003_B_D0-SIV_RNA1_Lib1_GL104_S94_R2_001_val_2
        64.1%
        48%
        49.1
        G260_Watkins07_AVR_r08014_B_D3-SIV_RNA1_Lib1_GL104_S10_R1_001_val_1
        54.8%
        48%
        34.3
        G260_Watkins07_AVR_r08014_B_D3-SIV_RNA1_Lib1_GL104_S10_R2_001_val_2
        58.0%
        49%
        34.3
        G261_Watkins07_Unvax_r15058_B_D3-SIV_RNA1_Lib1_GL104_S45_R1_001_val_1
        54.7%
        48%
        40.6
        G261_Watkins07_Unvax_r15058_B_D3-SIV_RNA1_Lib1_GL104_S45_R2_001_val_2
        58.1%
        49%
        40.6
        G262_Watkins07_Unvax_r16003_B_D3-SIV_RNA1_Lib1_GL105_S72_R1_001_val_1
        58.9%
        47%
        41.8
        G262_Watkins07_Unvax_r16003_B_D3-SIV_RNA1_Lib1_GL105_S72_R2_001_val_2
        55.0%
        48%
        41.8
        G263_Watkins07_AVR_r08014_B_D7-SIV_RNA1_Lib1_GL105_S56_R1_001_val_1
        65.4%
        48%
        46.8
        G263_Watkins07_AVR_r08014_B_D7-SIV_RNA1_Lib1_GL105_S56_R2_001_val_2
        63.5%
        49%
        46.8
        G264_Watkins07_Unvax_r15058_B_D7-SIV_RNA1_Lib1_GL104_S71_R1_001_val_1
        56.9%
        48%
        47.4
        G264_Watkins07_Unvax_r15058_B_D7-SIV_RNA1_Lib1_GL104_S71_R2_001_val_2
        60.3%
        49%
        47.4
        G265_Watkins07_Unvax_r16003_B_D7-SIV_RNA1_Lib1_GL104_S24_R1_001_val_1
        58.6%
        48%
        35.4
        G265_Watkins07_Unvax_r16003_B_D7-SIV_RNA1_Lib1_GL104_S24_R2_001_val_2
        62.4%
        49%
        35.4
        G266_Watkins07_Unvax_r17103_B_D0-SIV_RNA1_Lib1_GL102_S97_R1_001_val_1
        55.0%
        47%
        41.8
        G266_Watkins07_Unvax_r17103_B_D0-SIV_RNA1_Lib1_GL102_S97_R2_001_val_2
        53.7%
        47%
        41.8
        G267_Watkins07_Unvax_r18067_B_D0-SIV_RNA1_Lib1_GL102_S1_R1_001_val_1
        52.2%
        47%
        28.9
        G267_Watkins07_Unvax_r18067_B_D0-SIV_RNA1_Lib1_GL102_S1_R2_001_val_2
        48.4%
        48%
        28.9
        G268_Watkins07_AVR_r08014_B_D10-SIV_RNA1_Lib1_GL105_S87_R1_001_val_1
        63.4%
        47%
        47.3
        G268_Watkins07_AVR_r08014_B_D10-SIV_RNA1_Lib1_GL105_S87_R2_001_val_2
        62.3%
        48%
        47.3
        G269_Watkins07_Unvax_r15058_B_D10-SIV_RNA1_Lib1_GL102_S14_R1_001_val_1
        60.2%
        49%
        35.0
        G269_Watkins07_Unvax_r15058_B_D10-SIV_RNA1_Lib1_GL102_S14_R2_001_val_2
        56.1%
        50%
        35.0
        G270_Watkins07_Unvax_r16003_B_D10-SIV_RNA1_Lib1_GL104_S6_R1_001_val_1
        61.2%
        47%
        48.9
        G270_Watkins07_Unvax_r16003_B_D10-SIV_RNA1_Lib1_GL104_S6_R2_001_val_2
        64.0%
        47%
        48.9
        G271_Watkins07_Unvax_r17103_B_D3-SIV_RNA1_Lib1_GL102_S25_R1_001_val_1
        56.8%
        48%
        45.1
        G271_Watkins07_Unvax_r17103_B_D3-SIV_RNA1_Lib1_GL102_S25_R2_001_val_2
        54.5%
        48%
        45.1
        G272_Watkins07_Unvax_r18067_B_D3-SIV_RNA1_Lib1_GL102_S5_R1_001_val_1
        50.7%
        49%
        31.1
        G272_Watkins07_Unvax_r18067_B_D3-SIV_RNA1_Lib1_GL102_S5_R2_001_val_2
        49.0%
        49%
        31.1
        G273_Watkins07_AVR_r08014_B_D14-SIV_RNA1_Lib1_GL104_S62_R1_001_val_1
        59.4%
        48%
        38.3
        G273_Watkins07_AVR_r08014_B_D14-SIV_RNA1_Lib1_GL104_S62_R2_001_val_2
        63.6%
        49%
        38.3
        G274_Watkins07_Unvax_r15058_B_D14-SIV_RNA1_Lib1_GL104_S21_R1_001_val_1
        55.8%
        48%
        38.4
        G274_Watkins07_Unvax_r15058_B_D14-SIV_RNA1_Lib1_GL104_S21_R2_001_val_2
        58.8%
        49%
        38.4
        G275_Watkins07_Unvax_r16003_B_D14-SIV_RNA1_Lib1_GL102_S26_R1_001_val_1
        56.2%
        48%
        36.0
        G275_Watkins07_Unvax_r16003_B_D14-SIV_RNA1_Lib1_GL102_S26_R2_001_val_2
        54.4%
        49%
        36.0
        G276_Watkins07_Unvax_r17103_B_D7-SIV_RNA1_Lib1_GL104_S87_R1_001_val_1
        53.3%
        47%
        40.3
        G276_Watkins07_Unvax_r17103_B_D7-SIV_RNA1_Lib1_GL104_S87_R2_001_val_2
        56.4%
        47%
        40.3
        G277_Watkins07_Unvax_r18067_B_D7-SIV_RNA1_Lib1_GL102_S65_R1_001_val_1
        60.5%
        48%
        46.5
        G277_Watkins07_Unvax_r18067_B_D7-SIV_RNA1_Lib1_GL102_S65_R2_001_val_2
        59.0%
        49%
        46.5
        G278_Watkins07_AVR_r17017_B_D0-SIV_RNA1_Lib1_GL104_S33_R1_001_val_1
        54.4%
        48%
        42.8
        G278_Watkins07_AVR_r17017_B_D0-SIV_RNA1_Lib1_GL104_S33_R2_001_val_2
        55.9%
        48%
        42.8
        G279_Watkins07_Unvax_r17039_B_D0-SIV_RNA1_Lib1_GL102_S70_R1_001_val_1
        59.9%
        49%
        40.4
        G279_Watkins07_Unvax_r17039_B_D0-SIV_RNA1_Lib1_GL102_S70_R2_001_val_2
        58.0%
        50%
        40.4
        G280_Watkins07_Unvax_r17103_B_D10-SIV_RNA1_Lib1_GL102_S101_R1_001_val_1
        59.9%
        48%
        42.4
        G280_Watkins07_Unvax_r17103_B_D10-SIV_RNA1_Lib1_GL102_S101_R2_001_val_2
        58.5%
        48%
        42.4
        G281_Watkins07_Unvax_r18067_B_D10-SIV_RNA1_Lib1_GL104_S59_R1_001_val_1
        59.5%
        48%
        41.9
        G281_Watkins07_Unvax_r18067_B_D10-SIV_RNA1_Lib1_GL104_S59_R2_001_val_2
        61.9%
        48%
        41.9
        G282_Watkins07_AVR_r17017_B_D3-SIV_RNA1_Lib1_GL102_S50_R1_001_val_1
        59.7%
        49%
        41.3
        G282_Watkins07_AVR_r17017_B_D3-SIV_RNA1_Lib1_GL102_S50_R2_001_val_2
        56.3%
        49%
        41.3
        G283_Watkins07_Unvax_r17039_B_D3-SIV_RNA1_Lib1_GL102_S89_R1_001_val_1
        56.2%
        47%
        38.9
        G283_Watkins07_Unvax_r17039_B_D3-SIV_RNA1_Lib1_GL102_S89_R2_001_val_2
        54.2%
        48%
        38.9
        G284_Watkins07_Unvax_r17103_B_D14-SIV_RNA1_Lib1_GL104_S38_R1_001_val_1
        56.5%
        48%
        37.9
        G284_Watkins07_Unvax_r17103_B_D14-SIV_RNA1_Lib1_GL104_S38_R2_001_val_2
        60.3%
        48%
        37.9
        G285_Watkins07_Unvax_r18067_B_D14-SIV_RNA1_Lib1_GL104_S34_R1_001_val_1
        58.3%
        48%
        43.0
        G285_Watkins07_Unvax_r18067_B_D14-SIV_RNA1_Lib1_GL104_S34_R2_001_val_2
        61.2%
        49%
        43.0
        G286_Watkins07_AVR_r17017_B_D7-SIV_RNA1_Lib1_GL104_S93_R1_001_val_1
        62.9%
        47%
        45.0
        G286_Watkins07_AVR_r17017_B_D7-SIV_RNA1_Lib1_GL104_S93_R2_001_val_2
        66.0%
        47%
        45.0
        G287_Watkins07_Unvax_r17039_B_D7-SIV_RNA1_Lib1_GL102_S73_R1_001_val_1
        58.3%
        47%
        36.0
        G287_Watkins07_Unvax_r17039_B_D7-SIV_RNA1_Lib1_GL102_S73_R2_001_val_2
        55.6%
        48%
        36.0
        G288_Watkins07_AVR_r17017_B_D10-SIV_RNA1_Lib1_GL102_S64_R1_001_val_1
        56.8%
        48%
        31.5
        G288_Watkins07_AVR_r17017_B_D10-SIV_RNA1_Lib1_GL102_S64_R2_001_val_2
        54.5%
        49%
        31.5
        G289_Watkins07_Unvax_r17039_B_D10-SIV_RNA3_Lib1_GL102_S21_R1_001_val_1
        60.4%
        49%
        40.0
        G289_Watkins07_Unvax_r17039_B_D10-SIV_RNA3_Lib1_GL102_S21_R2_001_val_2
        59.0%
        50%
        40.0
        G290_Watkins07_AVR_r17017_B_D14-SIV_RNA1_Lib1_GL105_S59_R1_001_val_1
        66.0%
        48%
        50.3
        G290_Watkins07_AVR_r17017_B_D14-SIV_RNA1_Lib1_GL105_S59_R2_001_val_2
        64.8%
        49%
        50.3
        G291_Watkins07_Unvax_r17039_B_D14-SIV_RNA1_Lib1_GL102_S15_R1_001_val_1
        60.0%
        48%
        38.5
        G291_Watkins07_Unvax_r17039_B_D14-SIV_RNA1_Lib1_GL102_S15_R2_001_val_2
        58.3%
        49%
        38.5
        G292_Watkins07_Unvax_r12048_B_D0-SIV_RNA1_Lib1_GL104_S68_R1_001_val_1
        61.4%
        48%
        46.5
        G292_Watkins07_Unvax_r12048_B_D0-SIV_RNA1_Lib1_GL104_S68_R2_001_val_2
        64.3%
        49%
        46.5
        G293_Watkins07_Unvax_r12048_B_D3-SIV_RNA1_Lib1_GL102_S27_R1_001_val_1
        58.4%
        49%
        35.7
        G293_Watkins07_Unvax_r12048_B_D3-SIV_RNA1_Lib1_GL102_S27_R2_001_val_2
        56.8%
        49%
        35.7
        G294_Watkins07_Unvax_r12048_B_D7-SIV_RNA1_Lib1_GL105_S69_R1_001_val_1
        69.2%
        48%
        52.8
        G294_Watkins07_Unvax_r12048_B_D7-SIV_RNA1_Lib1_GL105_S69_R2_001_val_2
        67.9%
        48%
        52.8
        G295_Watkins07_AVR_rh3032_B_D0-SIV_RNA1_Lib1_GL104_S47_R1_001_val_1
        54.6%
        48%
        39.1
        G295_Watkins07_AVR_rh3032_B_D0-SIV_RNA1_Lib1_GL104_S47_R2_001_val_2
        58.3%
        49%
        39.1
        G296_Watkins07_AVR_rh3033_B_D0-SIV_RNA1_Lib1_GL102_S66_R1_001_val_1
        54.8%
        48%
        34.7
        G296_Watkins07_AVR_rh3033_B_D0-SIV_RNA1_Lib1_GL102_S66_R2_001_val_2
        52.7%
        49%
        34.7
        G297_Watkins07_Unvax_r12048_B_D10-SIV_RNA1_Lib1_GL105_S71_R1_001_val_1
        61.1%
        47%
        44.7
        G297_Watkins07_Unvax_r12048_B_D10-SIV_RNA1_Lib1_GL105_S71_R2_001_val_2
        59.4%
        48%
        44.7
        G298_Watkins07_AVR_rh3032_B_D3-SIV_RNA1_Lib1_GL104_S31_R1_001_val_1
        54.3%
        48%
        42.5
        G298_Watkins07_AVR_rh3032_B_D3-SIV_RNA1_Lib1_GL104_S31_R2_001_val_2
        56.9%
        48%
        42.5
        G299_Watkins07_AVR_rh3033_B_D3-SIV_RNA1_Lib1_GL104_S54_R1_001_val_1
        55.6%
        48%
        44.3
        G299_Watkins07_AVR_rh3033_B_D3-SIV_RNA1_Lib1_GL104_S54_R2_001_val_2
        58.4%
        49%
        44.3
        G300_Watkins07_Unvax_r05035_B_D0-SIV_RNA1_Lib1_GL105_S80_R1_001_val_1
        60.2%
        48%
        46.8
        G300_Watkins07_Unvax_r05035_B_D0-SIV_RNA1_Lib1_GL105_S80_R2_001_val_2
        58.9%
        48%
        46.8
        G301_Watkins07_Unvax_r05035_B_D3-SIV_RNA1_Lib1_GL102_S61_R1_001_val_1
        58.4%
        48%
        36.4
        G301_Watkins07_Unvax_r05035_B_D3-SIV_RNA1_Lib1_GL102_S61_R2_001_val_2
        56.0%
        49%
        36.4
        G302_Watkins07_Unvax_r05035_B_D7-SIV_RNA1_Lib1_GL104_S101_R1_001_val_1
        60.7%
        46%
        38.7
        G302_Watkins07_Unvax_r05035_B_D7-SIV_RNA1_Lib1_GL104_S101_R2_001_val_2
        62.6%
        47%
        38.7
        G303_Watkins07_Unvax_r05035_B_D10-SIV_RNA1_Lib1_GL104_S77_R1_001_val_1
        66.3%
        47%
        59.1
        G303_Watkins07_Unvax_r05035_B_D10-SIV_RNA1_Lib1_GL104_S77_R2_001_val_2
        71.2%
        48%
        59.1
        G304_Watkins07_Unvax_r05035_B_D14-SIV_RNA1_Lib1_GL104_S64_R1_001_val_1
        59.4%
        48%
        46.7
        G304_Watkins07_Unvax_r05035_B_D14-SIV_RNA1_Lib1_GL104_S64_R2_001_val_2
        61.9%
        48%
        46.7
        G305_Watkins07_Unvax_r12048_B_D14-SIV_RNA1_Lib1_GL104_S11_R1_001_val_1
        54.1%
        48%
        34.3
        G305_Watkins07_Unvax_r12048_B_D14-SIV_RNA1_Lib1_GL104_S11_R2_001_val_2
        57.5%
        49%
        34.3
        G306_Watkins07_Unvax_r14010_B_D0-SIV_RNA1_Lib1_GL102_S71_R1_001_val_1
        65.3%
        49%
        45.7
        G306_Watkins07_Unvax_r14010_B_D0-SIV_RNA1_Lib1_GL102_S71_R2_001_val_2
        63.6%
        50%
        45.7
        G307_Watkins07_Unvax_r14010_B_D3-SIV_RNA1_Lib2_GL105_S92_R1_001_val_1
        57.4%
        48%
        35.7
        G307_Watkins07_Unvax_r14010_B_D3-SIV_RNA1_Lib2_GL105_S92_R2_001_val_2
        55.9%
        49%
        35.7
        G308_Watkins07_Unvax_r14010_B_D7-SIV_RNA1_Lib1_GL104_S44_R1_001_val_1
        59.6%
        48%
        37.3
        G308_Watkins07_Unvax_r14010_B_D7-SIV_RNA1_Lib1_GL104_S44_R2_001_val_2
        62.4%
        49%
        37.3
        G309_Watkins07_Unvax_r14010_B_D10-SIV_RNA1_Lib1_GL104_S57_R1_001_val_1
        63.7%
        48%
        45.7
        G309_Watkins07_Unvax_r14010_B_D10-SIV_RNA1_Lib1_GL104_S57_R2_001_val_2
        68.6%
        48%
        45.7
        G310_Watkins07_Unvax_r14010_B_D14-SIV_RNA1_Lib1_GL102_S99_R1_001_val_1
        59.1%
        48%
        44.4
        G310_Watkins07_Unvax_r14010_B_D14-SIV_RNA1_Lib1_GL102_S99_R2_001_val_2
        58.0%
        48%
        44.4
        G311_Watkins07_AVR_r14065_B_D0-SIV_RNA1_Lib1_GL105_S95_R1_001_val_1
        65.7%
        48%
        46.8
        G311_Watkins07_AVR_r14065_B_D0-SIV_RNA1_Lib1_GL105_S95_R2_001_val_2
        63.5%
        49%
        46.8
        G312_Watkins07_AVR_r14065_B_D4-SIV_RNA1_Lib1_GL102_S96_R1_001_val_1
        60.4%
        48%
        40.3
        G312_Watkins07_AVR_r14065_B_D4-SIV_RNA1_Lib1_GL102_S96_R2_001_val_2
        57.3%
        48%
        40.3
        G313_Watkins07_AVR_r14065_B_D7-SIV_RNA1_Lib1_GL102_S80_R1_001_val_1
        63.8%
        49%
        47.3
        G313_Watkins07_AVR_r14065_B_D7-SIV_RNA1_Lib1_GL102_S80_R2_001_val_2
        61.0%
        49%
        47.3
        G314_Watkins07_AVR_r14065_B_D10-SIV_RNA1_Lib1_GL102_S102_R1_001_val_1
        63.1%
        47%
        48.3
        G314_Watkins07_AVR_r14065_B_D10-SIV_RNA1_Lib1_GL102_S102_R2_001_val_2
        60.3%
        48%
        48.3
        G315_Watkins07_AVR_r14065_B_D14-SIV_RNA1_Lib1_GL105_S77_R1_001_val_1
        76.7%
        49%
        53.4
        G315_Watkins07_AVR_r14065_B_D14-SIV_RNA1_Lib1_GL105_S77_R2_001_val_2
        75.0%
        50%
        53.4
        G316_Watkins07_Unvax_r14095_B_D0-SIV_RNA1_Lib1_GL102_S75_R1_001_val_1
        58.9%
        48%
        37.9
        G316_Watkins07_Unvax_r14095_B_D0-SIV_RNA1_Lib1_GL102_S75_R2_001_val_2
        57.6%
        49%
        37.9
        G317_Watkins07_Unvax_r14095_B_D3-SIV_RNA1_Lib1_GL104_S49_R1_001_val_1
        56.2%
        48%
        41.1
        G317_Watkins07_Unvax_r14095_B_D3-SIV_RNA1_Lib1_GL104_S49_R2_001_val_2
        58.9%
        49%
        41.1
        G318_Watkins07_Unvax_r14095_B_D7-SIV_RNA1_Lib1_GL105_S62_R1_001_val_1
        63.0%
        48%
        51.8
        G318_Watkins07_Unvax_r14095_B_D7-SIV_RNA1_Lib1_GL105_S62_R2_001_val_2
        61.0%
        48%
        51.8
        G319_Watkins07_Unvax_r14095_B_D10-SIV_RNA1_Lib1_GL102_S82_R1_001_val_1
        64.2%
        48%
        42.7
        G319_Watkins07_Unvax_r14095_B_D10-SIV_RNA1_Lib1_GL102_S82_R2_001_val_2
        62.1%
        49%
        42.7
        G320_Watkins07_Unvax_r14095_B_D14-SIV_RNA1_Lib1_GL104_S103_R1_001_val_1
        56.7%
        47%
        39.9
        G320_Watkins07_Unvax_r14095_B_D14-SIV_RNA1_Lib1_GL104_S103_R2_001_val_2
        60.4%
        47%
        39.9
        G321_Watkins07_Unvax_r15057_B_D0-SIV_RNA1_Lib1_GL104_S104_R1_001_val_1
        57.8%
        48%
        41.0
        G321_Watkins07_Unvax_r15057_B_D0-SIV_RNA1_Lib1_GL104_S104_R2_001_val_2
        61.2%
        49%
        41.0
        G322_Watkins07_Unvax_r15057_B_D4-SIV_RNA1_Lib1_GL102_S8_R1_001_val_1
        64.6%
        48%
        44.6
        G322_Watkins07_Unvax_r15057_B_D4-SIV_RNA1_Lib1_GL102_S8_R2_001_val_2
        62.9%
        49%
        44.6
        G323_Watkins07_Unvax_r15057_B_D7-SIV_RNA1_Lib1_GL102_S103_R1_001_val_1
        63.8%
        48%
        41.1
        G323_Watkins07_Unvax_r15057_B_D7-SIV_RNA1_Lib1_GL102_S103_R2_001_val_2
        62.7%
        48%
        41.1
        G324_Watkins07_Unvax_r15057_B_D10-SIV_RNA1_Lib1_GL104_S17_R1_001_val_1
        62.6%
        48%
        46.7
        G324_Watkins07_Unvax_r15057_B_D10-SIV_RNA1_Lib1_GL104_S17_R2_001_val_2
        66.2%
        48%
        46.7
        G325_Watkins07_Unvax_r15057_B_D14-SIV_RNA1_Lib1_GL102_S69_R1_001_val_1
        72.4%
        50%
        38.4
        G325_Watkins07_Unvax_r15057_B_D14-SIV_RNA1_Lib1_GL102_S69_R2_001_val_2
        70.5%
        51%
        38.4
        G326_Watkins07_Unvax_r15093_B_D0-SIV_RNA1_Lib1_GL102_S87_R1_001_val_1
        62.5%
        48%
        40.7
        G326_Watkins07_Unvax_r15093_B_D0-SIV_RNA1_Lib1_GL102_S87_R2_001_val_2
        59.3%
        49%
        40.7
        G327_Watkins07_Unvax_r15093_B_D3-SIV_RNA1_Lib1_GL102_S6_R1_001_val_1
        69.6%
        49%
        77.5
        G327_Watkins07_Unvax_r15093_B_D3-SIV_RNA1_Lib1_GL102_S6_R2_001_val_2
        66.5%
        50%
        77.5
        G328_Watkins07_Unvax_r15093_B_D7-SIV_RNA1_Lib1_GL105_S75_R1_001_val_1
        68.3%
        48%
        64.9
        G328_Watkins07_Unvax_r15093_B_D7-SIV_RNA1_Lib1_GL105_S75_R2_001_val_2
        66.5%
        49%
        64.9
        G329_Watkins07_Unvax_r15093_B_D10-SIV_RNA1_Lib1_GL102_S49_R1_001_val_1
        61.6%
        49%
        36.5
        G329_Watkins07_Unvax_r15093_B_D10-SIV_RNA1_Lib1_GL102_S49_R2_001_val_2
        60.5%
        50%
        36.5
        G330_Watkins07_Unvax_r15093_B_D14-SIV_RNA1_Lib1_GL104_S89_R1_001_val_1
        54.8%
        47%
        35.2
        G330_Watkins07_Unvax_r15093_B_D14-SIV_RNA1_Lib1_GL104_S89_R2_001_val_2
        57.2%
        48%
        35.2
        G331_Watkins07_AVR_r16007_B_D0-SIV_RNA1_Lib2_GL104_S98_R1_001_val_1
        54.1%
        48%
        27.3
        G331_Watkins07_AVR_r16007_B_D0-SIV_RNA1_Lib2_GL104_S98_R2_001_val_2
        57.9%
        49%
        27.3
        G332_Watkins07_AVR_r16007_B_D3-SIV_RNA1_Lib1_GL102_S95_R1_001_val_1
        63.5%
        48%
        41.9
        G332_Watkins07_AVR_r16007_B_D3-SIV_RNA1_Lib1_GL102_S95_R2_001_val_2
        61.9%
        49%
        41.9
        G333_Watkins07_AVR_r16007_B_D7-SIV_RNA1_Lib1_GL104_S52_R1_001_val_1
        66.2%
        49%
        49.1
        G333_Watkins07_AVR_r16007_B_D7-SIV_RNA1_Lib1_GL104_S52_R2_001_val_2
        70.0%
        50%
        49.1
        G334_Watkins07_AVR_r16007_B_D10-SIV_RNA1_Lib1_GL104_S86_R1_001_val_1
        67.2%
        48%
        53.2
        G334_Watkins07_AVR_r16007_B_D10-SIV_RNA1_Lib1_GL104_S86_R2_001_val_2
        71.1%
        49%
        53.2
        G335_Watkins07_AVR_r16007_B_D14-SIV_RNA1_Lib1_GL104_S81_R1_001_val_1
        67.1%
        48%
        53.2
        G335_Watkins07_AVR_r16007_B_D14-SIV_RNA1_Lib1_GL104_S81_R2_001_val_2
        70.9%
        49%
        53.2
        G336_Watkins07_Unvax_r17082_B_D-4-SIV_RNA1_Lib1_GL104_S28_R1_001_val_1
        58.8%
        49%
        40.6
        G336_Watkins07_Unvax_r17082_B_D-4-SIV_RNA1_Lib1_GL104_S28_R2_001_val_2
        61.4%
        49%
        40.6
        G337_Watkins07_Unvax_r17082_B_D10-SIV_RNA1_Lib1_GL104_S55_R1_001_val_1
        64.0%
        47%
        46.9
        G337_Watkins07_Unvax_r17082_B_D10-SIV_RNA1_Lib1_GL104_S55_R2_001_val_2
        68.1%
        48%
        46.9
        G338_Watkins07_Unvax_r17100_B_D0-SIV_RNA1_Lib1_GL102_S47_R1_001_val_1
        57.6%
        48%
        31.7
        G338_Watkins07_Unvax_r17100_B_D0-SIV_RNA1_Lib1_GL102_S47_R2_001_val_2
        56.0%
        49%
        31.7
        G339_Watkins07_Unvax_r17100_B_D4-SIV_RNA1_Lib1_GL104_S19_R1_001_val_1
        59.7%
        48%
        47.9
        G339_Watkins07_Unvax_r17100_B_D4-SIV_RNA1_Lib1_GL104_S19_R2_001_val_2
        63.6%
        48%
        47.9
        G340_Watkins07_Unvax_r17100_B_D7-SIV_RNA1_Lib1_GL105_S74_R1_001_val_1
        62.5%
        48%
        49.8
        G340_Watkins07_Unvax_r17100_B_D7-SIV_RNA1_Lib1_GL105_S74_R2_001_val_2
        61.3%
        49%
        49.8
        G341_Watkins07_Unvax_r17100_B_D10-SIV_RNA1_Lib1_GL102_S16_R1_001_val_1
        62.1%
        48%
        41.2
        G341_Watkins07_Unvax_r17100_B_D10-SIV_RNA1_Lib1_GL102_S16_R2_001_val_2
        60.6%
        49%
        41.2
        G342_Watkins07_Unvax_r17100_B_D14-SIV_RNA1_Lib1_GL102_S43_R1_001_val_1
        71.4%
        50%
        37.8
        G342_Watkins07_Unvax_r17100_B_D14-SIV_RNA1_Lib1_GL102_S43_R2_001_val_2
        68.7%
        51%
        37.8
        G343_Watkins07_AVR_r17115_B_D0-SIV_RNA1_Lib1_GL102_S41_R1_001_val_1
        53.5%
        48%
        31.0
        G343_Watkins07_AVR_r17115_B_D0-SIV_RNA1_Lib1_GL102_S41_R2_001_val_2
        52.0%
        48%
        31.0
        G344_Watkins07_AVR_r17115_B_D3-SIV_RNA1_Lib1_GL102_S76_R1_001_val_1
        50.4%
        48%
        29.9
        G344_Watkins07_AVR_r17115_B_D3-SIV_RNA1_Lib1_GL102_S76_R2_001_val_2
        47.8%
        49%
        29.9
        G345_Watkins07_AVR_r17115_B_D7-SIV_RNA1_Lib1_GL104_S66_R1_001_val_1
        54.0%
        47%
        38.1
        G345_Watkins07_AVR_r17115_B_D7-SIV_RNA1_Lib1_GL104_S66_R2_001_val_2
        56.7%
        48%
        38.1
        G346_Watkins07_AVR_r17115_B_D10-SIV_RNA1_Lib1_GL104_S95_R1_001_val_1
        60.6%
        47%
        42.1
        G346_Watkins07_AVR_r17115_B_D10-SIV_RNA1_Lib1_GL104_S95_R2_001_val_2
        63.1%
        48%
        42.1
        G347_Watkins07_AVR_r17115_B_D14-SIV_RNA1_Lib1_GL104_S83_R1_001_val_1
        60.0%
        47%
        48.0
        G347_Watkins07_AVR_r17115_B_D14-SIV_RNA1_Lib1_GL104_S83_R2_001_val_2
        61.5%
        47%
        48.0
        G348_Watkins07_Unvax_r18066_B_D0-SIV_RNA1_Lib1_GL105_S89_R1_001_val_1
        63.7%
        48%
        48.3
        G348_Watkins07_Unvax_r18066_B_D0-SIV_RNA1_Lib1_GL105_S89_R2_001_val_2
        61.0%
        48%
        48.3
        G349_Watkins07_Unvax_r18066_B_D3-SIV_RNA1_Lib1_GL104_S39_R1_001_val_1
        56.1%
        48%
        45.1
        G349_Watkins07_Unvax_r18066_B_D3-SIV_RNA1_Lib1_GL104_S39_R2_001_val_2
        59.1%
        48%
        45.1
        G350_Watkins07_Unvax_r18066_B_D7-SIV_RNA1_Lib1_GL102_S60_R1_001_val_1
        55.9%
        49%
        32.7
        G350_Watkins07_Unvax_r18066_B_D7-SIV_RNA1_Lib1_GL102_S60_R2_001_val_2
        53.5%
        50%
        32.7
        G351_Watkins07_Unvax_r18066_B_D10-SIV_RNA1_Lib1_GL102_S104_R1_001_val_1
        61.8%
        47%
        44.7
        G351_Watkins07_Unvax_r18066_B_D10-SIV_RNA1_Lib1_GL102_S104_R2_001_val_2
        59.3%
        47%
        44.7
        G352_Watkins07_Unvax_r18066_B_D13-SIV_RNA1_Lib1_GL104_S1_R1_001_val_1
        60.3%
        48%
        38.0
        G352_Watkins07_Unvax_r18066_B_D13-SIV_RNA1_Lib1_GL104_S1_R2_001_val_2
        63.8%
        48%
        38.0
        G353_Watkins07_Unvax_rh2494_B_D0-SIV_RNA1_Lib1_GL102_S55_R1_001_val_1
        69.2%
        48%
        38.3
        G353_Watkins07_Unvax_rh2494_B_D0-SIV_RNA1_Lib1_GL102_S55_R2_001_val_2
        67.0%
        49%
        38.3
        G354_Watkins07_Unvax_rh2494_B_D3-SIV_RNA1_Lib1_GL104_S40_R1_001_val_1
        58.1%
        48%
        36.9
        G354_Watkins07_Unvax_rh2494_B_D3-SIV_RNA1_Lib1_GL104_S40_R2_001_val_2
        61.0%
        49%
        36.9
        G355_Watkins07_Unvax_rh2494_B_D7-SIV_RNA1_Lib1_GL102_S39_R1_001_val_1
        65.3%
        49%
        39.8
        G355_Watkins07_Unvax_rh2494_B_D7-SIV_RNA1_Lib1_GL102_S39_R2_001_val_2
        62.8%
        50%
        39.8
        G356_Watkins07_Unvax_rh2494_B_D11-SIV_RNA1_Lib1_GL105_S61_R1_001_val_1
        66.9%
        48%
        54.9
        G356_Watkins07_Unvax_rh2494_B_D11-SIV_RNA1_Lib1_GL105_S61_R2_001_val_2
        65.2%
        49%
        54.9
        G357_Watkins07_Unvax_rh2494_B_D14-SIV_RNA2_Lib1_GL102_S74_R1_001_val_1
        63.8%
        48%
        43.4
        G357_Watkins07_Unvax_rh2494_B_D14-SIV_RNA2_Lib1_GL102_S74_R2_001_val_2
        61.3%
        49%
        43.4
        G358_Watkins07_Unvax_rh2504_B_D0-SIV_RNA1_Lib1_GL105_S94_R1_001_val_1
        65.1%
        49%
        49.1
        G358_Watkins07_Unvax_rh2504_B_D0-SIV_RNA1_Lib1_GL105_S94_R2_001_val_2
        62.6%
        49%
        49.1
        G359_Watkins07_Unvax_rh2504_B_D3-SIV_RNA1_Lib1_GL102_S78_R1_001_val_1
        61.4%
        48%
        35.7
        G359_Watkins07_Unvax_rh2504_B_D3-SIV_RNA1_Lib1_GL102_S78_R2_001_val_2
        60.0%
        49%
        35.7
        G360_Watkins07_Unvax_rh2504_B_D7-SIV_RNA1_Lib1_GL105_S90_R1_001_val_1
        67.1%
        48%
        44.4
        G360_Watkins07_Unvax_rh2504_B_D7-SIV_RNA1_Lib1_GL105_S90_R2_001_val_2
        65.7%
        49%
        44.4
        G361_Watkins07_Unvax_rh2504_B_D10-SIV_RNA1_Lib1_GL104_S80_R1_001_val_1
        63.4%
        47%
        49.0
        G361_Watkins07_Unvax_rh2504_B_D10-SIV_RNA1_Lib1_GL104_S80_R2_001_val_2
        66.4%
        48%
        49.0
        G362_Watkins07_Unvax_rh2504_B_D14-SIV_RNA1_Lib1_GL104_S8_R1_001_val_1
        62.0%
        48%
        45.1
        G362_Watkins07_Unvax_rh2504_B_D14-SIV_RNA1_Lib1_GL104_S8_R2_001_val_2
        66.4%
        49%
        45.1
        G363_Watkins07_Unvax_rh2527_B_D0-SIV_RNA1_Lib1_GL104_S67_R1_001_val_1
        64.9%
        48%
        46.7
        G363_Watkins07_Unvax_rh2527_B_D0-SIV_RNA1_Lib1_GL104_S67_R2_001_val_2
        68.0%
        49%
        46.7
        G364_Watkins07_Unvax_rh2527_B_D3-SIV_RNA1_Lib1_GL104_S63_R1_001_val_1
        61.3%
        48%
        47.8
        G364_Watkins07_Unvax_rh2527_B_D3-SIV_RNA1_Lib1_GL104_S63_R2_001_val_2
        65.5%
        49%
        47.8
        G365_Watkins07_Unvax_rh2527_B_D7-SIV_RNA1_Lib1_GL105_S82_R1_001_val_1
        79.6%
        49%
        60.4
        G365_Watkins07_Unvax_rh2527_B_D7-SIV_RNA1_Lib1_GL105_S82_R2_001_val_2
        78.4%
        50%
        60.4
        G366_Watkins07_Unvax_rh2527_B_D10-SIV_RNA1_Lib1_GL104_S61_R1_001_val_1
        66.1%
        48%
        44.8
        G366_Watkins07_Unvax_rh2527_B_D10-SIV_RNA1_Lib1_GL104_S61_R2_001_val_2
        69.0%
        49%
        44.8
        G367_Watkins07_Unvax_rh2527_B_D14-SIV_RNA1_Lib1_GL105_S76_R1_001_val_1
        65.8%
        49%
        51.5
        G367_Watkins07_Unvax_rh2527_B_D14-SIV_RNA1_Lib1_GL105_S76_R2_001_val_2
        64.6%
        49%
        51.5
        G368_Watkins07_Unvax_rh2756_B_D0-SIV_RNA1_Lib1_GL102_S3_R1_001_val_1
        59.2%
        48%
        31.0
        G368_Watkins07_Unvax_rh2756_B_D0-SIV_RNA1_Lib1_GL102_S3_R2_001_val_2
        57.6%
        49%
        31.0
        G369_Watkins07_Unvax_rh2756_B_D3-SIV_RNA1_Lib1_GL102_S9_R1_001_val_1
        63.0%
        48%
        37.2
        G369_Watkins07_Unvax_rh2756_B_D3-SIV_RNA1_Lib1_GL102_S9_R2_001_val_2
        59.5%
        49%
        37.2
        G370_Watkins07_Unvax_rh2756_B_D7-SIV_RNA1_Lib1_GL104_S9_R1_001_val_1
        59.2%
        48%
        41.5
        G370_Watkins07_Unvax_rh2756_B_D7-SIV_RNA1_Lib1_GL104_S9_R2_001_val_2
        62.4%
        49%
        41.5
        G371_Watkins07_Unvax_rh2756_B_D10-SIV_RNA1_Lib1_GL105_S68_R1_001_val_1
        67.6%
        48%
        56.3
        G371_Watkins07_Unvax_rh2756_B_D10-SIV_RNA1_Lib1_GL105_S68_R2_001_val_2
        66.7%
        48%
        56.3
        G372_Watkins07_Unvax_rh2756_B_D14-SIV_RNA1_Lib1_GL104_S48_R1_001_val_1
        62.7%
        48%
        46.7
        G372_Watkins07_Unvax_rh2756_B_D14-SIV_RNA1_Lib1_GL104_S48_R2_001_val_2
        65.9%
        49%
        46.7
        G373_Watkins07_Unvax_rh2810_B_D0-SIV_RNA1_Lib1_GL105_S86_R1_001_val_1
        58.4%
        48%
        41.3
        G373_Watkins07_Unvax_rh2810_B_D0-SIV_RNA1_Lib1_GL105_S86_R2_001_val_2
        55.0%
        49%
        41.3
        G374_Watkins07_Unvax_rh2810_B_D3-SIV_RNA1_Lib1_GL104_S15_R1_001_val_1
        55.4%
        48%
        39.8
        G374_Watkins07_Unvax_rh2810_B_D3-SIV_RNA1_Lib1_GL104_S15_R2_001_val_2
        58.4%
        48%
        39.8
        G375_Watkins07_Unvax_rh2810_B_D7-SIV_RNA1_Lib1_GL104_S20_R1_001_val_1
        57.3%
        48%
        39.1
        G375_Watkins07_Unvax_rh2810_B_D7-SIV_RNA1_Lib1_GL104_S20_R2_001_val_2
        60.1%
        49%
        39.1
        G376_Watkins07_Unvax_rh2810_B_D10-SIV_RNA1_Lib1_GL102_S63_R1_001_val_1
        62.6%
        49%
        37.0
        G376_Watkins07_Unvax_rh2810_B_D10-SIV_RNA1_Lib1_GL102_S63_R2_001_val_2
        60.3%
        49%
        37.0
        G377_Watkins07_Unvax_rh2810_B_D14-SIV_RNA1_Lib1_GL102_S56_R1_001_val_1
        64.9%
        48%
        41.8
        G377_Watkins07_Unvax_rh2810_B_D14-SIV_RNA1_Lib1_GL102_S56_R2_001_val_2
        62.0%
        49%
        41.8
        G378_Watkins07_Unvax_rh2848_B_D0-SIV_RNA1_Lib1_GL104_S29_R1_001_val_1
        54.5%
        48%
        36.7
        G378_Watkins07_Unvax_rh2848_B_D0-SIV_RNA1_Lib1_GL104_S29_R2_001_val_2
        57.5%
        49%
        36.7
        G379_Watkins07_Unvax_rh2848_B_D3-SIV_RNA1_Lib1_GL102_S17_R1_001_val_1
        58.1%
        48%
        35.6
        G379_Watkins07_Unvax_rh2848_B_D3-SIV_RNA1_Lib1_GL102_S17_R2_001_val_2
        55.6%
        49%
        35.6
        G380_Watkins07_Unvax_rh2848_B_D7-SIV_RNA1_Lib1_GL104_S32_R1_001_val_1
        56.2%
        48%
        38.3
        G380_Watkins07_Unvax_rh2848_B_D7-SIV_RNA1_Lib1_GL104_S32_R2_001_val_2
        58.7%
        49%
        38.3
        G381_Watkins07_Unvax_rh2848_B_D10-SIV_RNA1_Lib1_GL104_S99_R1_001_val_1
        61.3%
        47%
        41.6
        G381_Watkins07_Unvax_rh2848_B_D10-SIV_RNA1_Lib1_GL104_S99_R2_001_val_2
        64.9%
        48%
        41.6
        G382_Watkins07_Unvax_rh2848_B_D14-SIV_RNA1_Lib1_GL102_S83_R1_001_val_1
        59.8%
        48%
        39.2
        G382_Watkins07_Unvax_rh2848_B_D14-SIV_RNA1_Lib1_GL102_S83_R2_001_val_2
        56.4%
        49%
        39.2
        G383_Watkins07_Unvax_rh2861_B_D0-SIV_RNA1_Lib1_GL102_S29_R1_001_val_1
        60.3%
        49%
        37.6
        G383_Watkins07_Unvax_rh2861_B_D0-SIV_RNA1_Lib1_GL102_S29_R2_001_val_2
        57.4%
        50%
        37.6
        G384_Watkins07_Unvax_rh2861_B_D3-SIV_RNA1_Lib1_GL102_S40_R1_001_val_1
        59.0%
        48%
        36.3
        G384_Watkins07_Unvax_rh2861_B_D3-SIV_RNA1_Lib1_GL102_S40_R2_001_val_2
        56.1%
        49%
        36.3
        G385_Watkins07_Unvax_rh2861_B_D7-SIV_RNA1_Lib1_GL105_S83_R1_001_val_1
        63.6%
        48%
        48.2
        G385_Watkins07_Unvax_rh2861_B_D7-SIV_RNA1_Lib1_GL105_S83_R2_001_val_2
        62.3%
        49%
        48.2
        G386_Watkins07_Unvax_rh2861_B_D10-SIV_RNA1_Lib1_GL104_S30_R1_001_val_1
        58.2%
        48%
        38.9
        G386_Watkins07_Unvax_rh2861_B_D10-SIV_RNA1_Lib1_GL104_S30_R2_001_val_2
        61.4%
        49%
        38.9
        G387_Watkins07_Unvax_rh2861_B_D14-SIV_RNA1_Lib1_GL104_S76_R1_001_val_1
        56.9%
        47%
        42.8
        G387_Watkins07_Unvax_rh2861_B_D14-SIV_RNA1_Lib1_GL104_S76_R2_001_val_2
        60.0%
        48%
        42.8
        G388_Watkins07_AVR_rh2932_B_D0-SIV_RNA1_Lib1_GL102_S57_R1_001_val_1
        55.6%
        48%
        34.9
        G388_Watkins07_AVR_rh2932_B_D0-SIV_RNA1_Lib1_GL102_S57_R2_001_val_2
        53.6%
        49%
        34.9
        G389_Watkins07_AVR_rh2932_B_D3-SIV_RNA1_Lib1_GL104_S78_R1_001_val_1
        65.9%
        49%
        56.5
        G389_Watkins07_AVR_rh2932_B_D3-SIV_RNA1_Lib1_GL104_S78_R2_001_val_2
        69.7%
        49%
        56.5
        G390_Watkins07_AVR_rh2932_B_D7-SIV_RNA1_Lib1_GL102_S46_R1_001_val_1
        58.7%
        49%
        32.1
        G390_Watkins07_AVR_rh2932_B_D7-SIV_RNA1_Lib1_GL102_S46_R2_001_val_2
        57.4%
        50%
        32.1
        G391_Watkins07_AVR_rh2932_B_D10-SIV_RNA1_Lib1_GL105_S81_R1_001_val_1
        68.5%
        47%
        48.1
        G391_Watkins07_AVR_rh2932_B_D10-SIV_RNA1_Lib1_GL105_S81_R2_001_val_2
        65.9%
        48%
        48.1
        G392_Watkins07_AVR_rh2932_B_D14-SIV_RNA1_Lib1_GL102_S90_R1_001_val_1
        63.9%
        48%
        37.9
        G392_Watkins07_AVR_rh2932_B_D14-SIV_RNA1_Lib1_GL102_S90_R2_001_val_2
        61.0%
        49%
        37.9
        G393_Watkins07_AVR_rh2943_B_D0-SIV_RNA1_Lib1_GL104_S60_R1_001_val_1
        62.8%
        48%
        47.0
        G393_Watkins07_AVR_rh2943_B_D0-SIV_RNA1_Lib1_GL104_S60_R2_001_val_2
        66.3%
        49%
        47.0
        G394_Watkins07_AVR_rh2943_B_D3-SIV_RNA1_Lib1_GL104_S36_R1_001_val_1
        61.6%
        49%
        46.2
        G394_Watkins07_AVR_rh2943_B_D3-SIV_RNA1_Lib1_GL104_S36_R2_001_val_2
        66.4%
        49%
        46.2
        G395_Watkins07_AVR_rh2943_B_D7-SIV_RNA1_Lib1_GL104_S72_R1_001_val_1
        60.6%
        48%
        44.4
        G395_Watkins07_AVR_rh2943_B_D7-SIV_RNA1_Lib1_GL104_S72_R2_001_val_2
        63.3%
        49%
        44.4
        G396_Watkins07_AVR_rh2943_B_D10-SIV_RNA1_Lib1_GL104_S79_R1_001_val_1
        64.9%
        47%
        55.6
        G396_Watkins07_AVR_rh2943_B_D10-SIV_RNA1_Lib1_GL104_S79_R2_001_val_2
        68.9%
        48%
        55.6
        G397_Watkins07_AVR_rh2943_B_D14-SIV_RNA1_Lib1_GL102_S28_R1_001_val_1
        60.7%
        49%
        38.2
        G397_Watkins07_AVR_rh2943_B_D14-SIV_RNA1_Lib1_GL102_S28_R2_001_val_2
        59.0%
        50%
        38.2
        G398_Watkins07_Unvax_rh2995_B_D0-SIV_RNA1_Lib1_GL102_S58_R1_001_val_1
        57.6%
        48%
        37.6
        G398_Watkins07_Unvax_rh2995_B_D0-SIV_RNA1_Lib1_GL102_S58_R2_001_val_2
        55.5%
        49%
        37.6
        G399_Watkins07_Unvax_rh2995_B_D3-SIV_RNA1_Lib1_GL104_S65_R1_001_val_1
        54.7%
        48%
        42.3
        G399_Watkins07_Unvax_rh2995_B_D3-SIV_RNA1_Lib1_GL104_S65_R2_001_val_2
        58.7%
        48%
        42.3
        G400_Watkins07_Unvax_rh2995_B_D10-SIV_RNA1_Lib1_GL102_S81_R1_001_val_1
        56.6%
        47%
        36.5
        G400_Watkins07_Unvax_rh2995_B_D10-SIV_RNA1_Lib1_GL102_S81_R2_001_val_2
        54.3%
        48%
        36.5
        G401_Watkins07_Unvax_rh2995_B_D14-SIV_RNA1_Lib1_GL105_S67_R1_001_val_1
        55.4%
        48%
        42.4
        G401_Watkins07_Unvax_rh2995_B_D14-SIV_RNA1_Lib1_GL105_S67_R2_001_val_2
        54.0%
        48%
        42.4
        G403_Watkins07_Unvax_rh3000_B_D0-SIV_RNA1_Lib1_GL102_S42_R1_001_val_1
        54.6%
        48%
        33.7
        G403_Watkins07_Unvax_rh3000_B_D0-SIV_RNA1_Lib1_GL102_S42_R2_001_val_2
        52.3%
        49%
        33.7
        G404_Watkins07_Unvax_rh3000_B_D3-SIV_RNA1_Lib1_GL102_S48_R1_001_val_1
        51.6%
        48%
        34.5
        G404_Watkins07_Unvax_rh3000_B_D3-SIV_RNA1_Lib1_GL102_S48_R2_001_val_2
        49.5%
        49%
        34.5
        G405_Watkins07_Unvax_rh3000_B_D7-SIV_RNA1_Lib1_GL105_S64_R1_001_val_1
        62.0%
        48%
        52.0
        G405_Watkins07_Unvax_rh3000_B_D7-SIV_RNA1_Lib1_GL105_S64_R2_001_val_2
        60.8%
        49%
        52.0
        G406_Watkins07_Unvax_rh3000_B_D10-SIV_RNA1_Lib1_GL102_S34_R1_001_val_1
        57.3%
        49%
        32.8
        G406_Watkins07_Unvax_rh3000_B_D10-SIV_RNA1_Lib1_GL102_S34_R2_001_val_2
        55.6%
        50%
        32.8
        G407_Watkins07_AVR_rh3006_B_D0-SIV_RNA2_Lib1_GL102_S38_R1_001_val_1
        68.4%
        50%
        40.6
        G407_Watkins07_AVR_rh3006_B_D0-SIV_RNA2_Lib1_GL102_S38_R2_001_val_2
        66.5%
        51%
        40.6
        G408_Watkins07_AVR_rh3006_B_D3-SIV_RNA1_Lib1_GL105_S65_R1_001_val_1
        63.0%
        49%
        52.6
        G408_Watkins07_AVR_rh3006_B_D3-SIV_RNA1_Lib1_GL105_S65_R2_001_val_2
        58.9%
        49%
        52.6
        G409_Watkins07_AVR_rh3006_B_D7-SIV_RNA1_Lib1_GL104_S69_R1_001_val_1
        60.2%
        48%
        50.7
        G409_Watkins07_AVR_rh3006_B_D7-SIV_RNA1_Lib1_GL104_S69_R2_001_val_2
        64.3%
        49%
        50.7
        G410_Watkins07_AVR_rh3006_B_D10-SIV_RNA1_Lib1_GL102_S20_R1_001_val_1
        62.0%
        49%
        35.7
        G410_Watkins07_AVR_rh3006_B_D10-SIV_RNA1_Lib1_GL102_S20_R2_001_val_2
        60.2%
        50%
        35.7
        G411_Watkins07_AVR_rh3006_B_D14-SIV_RNA2_Lib1_GL104_S84_R1_001_val_1
        67.3%
        48%
        52.9
        G411_Watkins07_AVR_rh3006_B_D14-SIV_RNA2_Lib1_GL104_S84_R2_001_val_2
        70.9%
        49%
        52.9
        G412_Watkins07_AVR_rh3011_B_D0-SIV_RNA2_Lib2_GL105_S78_R1_001_val_1
        68.2%
        50%
        27.0
        G412_Watkins07_AVR_rh3011_B_D0-SIV_RNA2_Lib2_GL105_S78_R2_001_val_2
        66.7%
        51%
        27.0
        G413_Watkins07_AVR_rh3011_B_D3-SIV_RNA1_Lib1_GL102_S93_R1_001_val_1
        63.6%
        48%
        36.8
        G413_Watkins07_AVR_rh3011_B_D3-SIV_RNA1_Lib1_GL102_S93_R2_001_val_2
        60.3%
        49%
        36.8
        G414_Watkins07_AVR_rh3011_B_D7-SIV_RNA1_Lib1_GL102_S44_R1_001_val_1
        63.6%
        49%
        36.2
        G414_Watkins07_AVR_rh3011_B_D7-SIV_RNA1_Lib1_GL102_S44_R2_001_val_2
        60.6%
        50%
        36.2
        G415_Watkins07_AVR_rh3011_B_D10-SIV_RNA1_Lib1_GL104_S26_R1_001_val_1
        69.6%
        50%
        39.0
        G415_Watkins07_AVR_rh3011_B_D10-SIV_RNA1_Lib1_GL104_S26_R2_001_val_2
        73.8%
        51%
        39.0
        G416_Watkins07_AVR_rh3011_B_D14-SIV_RNA1_Lib1_GL104_S90_R1_001_val_1
        72.2%
        49%
        39.3
        G416_Watkins07_AVR_rh3011_B_D14-SIV_RNA1_Lib1_GL104_S90_R2_001_val_2
        76.4%
        50%
        39.3
        G417_Watkins07_Unvax_rh3013_B_D0-SIV_RNA1_Lib1_GL105_S66_R1_001_val_1
        64.9%
        48%
        46.0
        G417_Watkins07_Unvax_rh3013_B_D0-SIV_RNA1_Lib1_GL105_S66_R2_001_val_2
        63.2%
        49%
        46.0
        G419_Watkins07_Unvax_rh3013_B_D7-SIV_RNA1_Lib1_GL104_S37_R1_001_val_1
        63.5%
        48%
        46.7
        G419_Watkins07_Unvax_rh3013_B_D7-SIV_RNA1_Lib1_GL104_S37_R2_001_val_2
        67.8%
        49%
        46.7
        G420_Watkins07_Unvax_rh3013_B_D10-SIV_RNA1_Lib1_GL104_S14_R1_001_val_1
        63.4%
        48%
        46.1
        G420_Watkins07_Unvax_rh3013_B_D10-SIV_RNA1_Lib1_GL104_S14_R2_001_val_2
        66.2%
        49%
        46.1
        G421_Watkins07_Unvax_rh3013_B_D14-SIV_RNA1_Lib1_GL104_S7_R1_001_val_1
        65.2%
        47%
        41.3
        G421_Watkins07_Unvax_rh3013_B_D14-SIV_RNA1_Lib1_GL104_S7_R2_001_val_2
        69.3%
        48%
        41.3
        G422_Watkins07_AVR_rh3032_B_D7-SIV_RNA1_Lib1_GL104_S16_R1_001_val_1
        51.4%
        48%
        33.0
        G422_Watkins07_AVR_rh3032_B_D7-SIV_RNA1_Lib1_GL104_S16_R2_001_val_2
        54.5%
        49%
        33.0
        G423_Watkins07_AVR_rh3032_B_D10-SIV_RNA1_Lib1_GL102_S19_R1_001_val_1
        58.6%
        48%
        37.8
        G423_Watkins07_AVR_rh3032_B_D10-SIV_RNA1_Lib1_GL102_S19_R2_001_val_2
        56.5%
        49%
        37.8
        G424_Watkins07_AVR_rh3032_B_D14-SIV_RNA1_Lib1_GL102_S85_R1_001_val_1
        62.0%
        48%
        45.5
        G424_Watkins07_AVR_rh3032_B_D14-SIV_RNA1_Lib1_GL102_S85_R2_001_val_2
        59.9%
        49%
        45.5
        G425_Watkins07_AVR_rh3032_B_D7-SIV_RNA1_Lib2_GL105_S93_R1_001_val_1
        56.5%
        48%
        35.0
        G425_Watkins07_AVR_rh3032_B_D7-SIV_RNA1_Lib2_GL105_S93_R2_001_val_2
        53.8%
        49%
        35.0
        G426_Watkins07_AVR_rh3033_B_D10-SIV_RNA1_Lib1_GL102_S88_R1_001_val_1
        60.6%
        48%
        43.4
        G426_Watkins07_AVR_rh3033_B_D10-SIV_RNA1_Lib1_GL102_S88_R2_001_val_2
        58.1%
        48%
        43.4
        G427_Watkins07_AVR_rh3033_B_D14-SIV_RNA1_Lib1_GL104_S4_R1_001_val_1
        54.9%
        48%
        40.1
        G427_Watkins07_AVR_rh3033_B_D14-SIV_RNA1_Lib1_GL104_S4_R2_001_val_2
        57.1%
        48%
        40.1
        G428_Watkins07_AVR_rh3036_B_D0-SIV_RNA1_Lib1_GL102_S36_R1_001_val_1
        63.9%
        49%
        34.1
        G428_Watkins07_AVR_rh3036_B_D0-SIV_RNA1_Lib1_GL102_S36_R2_001_val_2
        60.1%
        50%
        34.1
        G429_Watkins07_AVR_rh3036_B_D3-SIV_RNA1_Lib1_GL102_S98_R1_001_val_1
        66.2%
        47%
        56.9
        G429_Watkins07_AVR_rh3036_B_D3-SIV_RNA1_Lib1_GL102_S98_R2_001_val_2
        66.0%
        48%
        56.9
        G430_Watkins07_AVR_rh3036_B_D7-SIV_RNA1_Lib1_GL102_S67_R1_001_val_1
        63.1%
        48%
        39.9
        G430_Watkins07_AVR_rh3036_B_D7-SIV_RNA1_Lib1_GL102_S67_R2_001_val_2
        61.5%
        49%
        39.9
        G431_Watkins07_AVR_rh3036_B_D10-SIV_RNA1_Lib1_GL102_S35_R1_001_val_1
        59.9%
        48%
        39.7
        G431_Watkins07_AVR_rh3036_B_D10-SIV_RNA1_Lib1_GL102_S35_R2_001_val_2
        57.8%
        49%
        39.7
        G432_Watkins07_AVR_rh3036_B_D14-SIV_RNA1_Lib1_GL104_S41_R1_001_val_1
        58.2%
        48%
        32.1
        G432_Watkins07_AVR_rh3036_B_D14-SIV_RNA1_Lib1_GL104_S41_R2_001_val_2
        61.7%
        48%
        32.1
        G433_Watkins07_AVR_rh3037_B_D0-SIV_RNA1_Lib1_GL102_S92_R1_001_val_1
        59.6%
        48%
        45.0
        G433_Watkins07_AVR_rh3037_B_D0-SIV_RNA1_Lib1_GL102_S92_R2_001_val_2
        57.2%
        49%
        45.0
        G434_Watkins07_AVR_rh3037_B_D3-SIV_RNA1_Lib1_GL105_S58_R1_001_val_1
        63.1%
        49%
        42.7
        G434_Watkins07_AVR_rh3037_B_D3-SIV_RNA1_Lib1_GL105_S58_R2_001_val_2
        59.2%
        49%
        42.7
        G435_Watkins07_AVR_rh3037_B_D7-SIV_RNA1_Lib1_GL104_S58_R1_001_val_1
        56.7%
        48%
        45.2
        G435_Watkins07_AVR_rh3037_B_D7-SIV_RNA1_Lib1_GL104_S58_R2_001_val_2
        59.2%
        49%
        45.2
        G436_Watkins07_AVR_rh3037_B_D10-SIV_RNA1_Lib1_GL104_S88_R1_001_val_1
        57.2%
        48%
        42.2
        G436_Watkins07_AVR_rh3037_B_D10-SIV_RNA1_Lib1_GL104_S88_R2_001_val_2
        60.0%
        48%
        42.2
        G437_Watkins07_AVR_rh3037_B_D14-SIV_RNA1_Lib1_GL102_S30_R1_001_val_1
        59.5%
        49%
        36.0
        G437_Watkins07_AVR_rh3037_B_D14-SIV_RNA1_Lib1_GL102_S30_R2_001_val_2
        58.0%
        50%
        36.0
        G438_Watkins07_AVR_rh3045_B_D0-SIV_RNA1_Lib1_GL105_S84_R1_001_val_1
        56.3%
        48%
        44.4
        G438_Watkins07_AVR_rh3045_B_D0-SIV_RNA1_Lib1_GL105_S84_R2_001_val_2
        54.5%
        48%
        44.4
        G439_Watkins07_AVR_rh3045_B_D3-SIV_RNA1_Lib1_GL102_S45_R1_001_val_1
        54.3%
        49%
        30.6
        G439_Watkins07_AVR_rh3045_B_D3-SIV_RNA1_Lib1_GL102_S45_R2_001_val_2
        50.2%
        50%
        30.6
        G440_Watkins07_AVR_rh3045_B_D7-SIV_RNA1_Lib1_GL104_S12_R1_001_val_1
        55.5%
        49%
        37.7
        G440_Watkins07_AVR_rh3045_B_D7-SIV_RNA1_Lib1_GL104_S12_R2_001_val_2
        58.6%
        50%
        37.7
        G441_Watkins07_AVR_rh3045_B_D10-SIV_RNA1_Lib1_GL102_S24_R1_001_val_1
        57.3%
        48%
        33.0
        G441_Watkins07_AVR_rh3045_B_D10-SIV_RNA1_Lib1_GL102_S24_R2_001_val_2
        55.0%
        49%
        33.0
        G442_Watkins07_AVR_rh3045_B_D14-SIV_RNA1_Lib1_GL102_S10_R1_001_val_1
        53.2%
        49%
        33.3
        G442_Watkins07_AVR_rh3045_B_D14-SIV_RNA1_Lib1_GL102_S10_R2_001_val_2
        51.2%
        49%
        33.3
        G443_Watkins07_AVR_rh3048_B_D0-SIV_RNA1_Lib1_GL102_S91_R1_001_val_1
        60.4%
        48%
        39.8
        G443_Watkins07_AVR_rh3048_B_D0-SIV_RNA1_Lib1_GL102_S91_R2_001_val_2
        58.6%
        49%
        39.8
        G444_Watkins07_AVR_rh3048_B_D3-SIV_RNA1_Lib1_GL104_S56_R1_001_val_1
        55.1%
        48%
        39.9
        G444_Watkins07_AVR_rh3048_B_D3-SIV_RNA1_Lib1_GL104_S56_R2_001_val_2
        58.6%
        49%
        39.9
        G445_Watkins07_AVR_rh3048_B_D7-SIV_RNA1_Lib1_GL105_S88_R1_001_val_1
        71.2%
        49%
        52.4
        G445_Watkins07_AVR_rh3048_B_D7-SIV_RNA1_Lib1_GL105_S88_R2_001_val_2
        67.5%
        50%
        52.4
        G446_Watkins07_AVR_rh3048_B_D10-SIV_RNA1_Lib1_GL104_S97_R1_001_val_1
        64.2%
        48%
        48.0
        G446_Watkins07_AVR_rh3048_B_D10-SIV_RNA1_Lib1_GL104_S97_R2_001_val_2
        68.0%
        49%
        48.0
        G447_Watkins07_AVR_rh3048_B_D14-SIV_RNA1_Lib1_GL104_S18_R1_001_val_1
        62.5%
        49%
        39.9
        G447_Watkins07_AVR_rh3048_B_D14-SIV_RNA1_Lib1_GL104_S18_R2_001_val_2
        65.5%
        50%
        39.9
        G448_Watkins07_AVR_rh3053_B_D-7-SIV_RNA1_Lib1_GL104_S35_R1_001_val_1
        55.5%
        48%
        41.6
        G448_Watkins07_AVR_rh3053_B_D-7-SIV_RNA1_Lib1_GL104_S35_R2_001_val_2
        58.5%
        49%
        41.6
        G449_Watkins07_AVR_rh3053_B_D3-SIV_RNA1_Lib1_GL104_S75_R1_001_val_1
        55.9%
        48%
        42.0
        G449_Watkins07_AVR_rh3053_B_D3-SIV_RNA1_Lib1_GL104_S75_R2_001_val_2
        58.5%
        48%
        42.0
        G450_Watkins07_AVR_rh3053_B_D7-SIV_RNA1_Lib1_GL104_S46_R1_001_val_1
        56.9%
        48%
        41.1
        G450_Watkins07_AVR_rh3053_B_D7-SIV_RNA1_Lib1_GL104_S46_R2_001_val_2
        60.2%
        49%
        41.1
        G451_Watkins07_AVR_rh3053_B_D10-SIV_RNA1_Lib1_GL104_S70_R1_001_val_1
        57.2%
        48%
        39.7
        G451_Watkins07_AVR_rh3053_B_D10-SIV_RNA1_Lib1_GL104_S70_R2_001_val_2
        60.2%
        48%
        39.7
        G452_Watkins07_AVR_rh3053_B_D14-SIV_RNA1_Lib1_GL105_S91_R1_001_val_1
        63.4%
        48%
        53.2
        G452_Watkins07_AVR_rh3053_B_D14-SIV_RNA1_Lib1_GL105_S91_R2_001_val_2
        61.8%
        49%
        53.2
        G453_Watkins07_AVR_rh3053_B_D0_RNA1_Lib1_GL104_S27_R1_001_val_1
        53.5%
        48%
        43.5
        G453_Watkins07_AVR_rh3053_B_D0_RNA1_Lib1_GL104_S27_R2_001_val_2
        57.5%
        49%
        43.5
        G454_Watkins07_Unvax_rh2995_B_D7_RNA1_Lib1_GL104_S92_R1_001_val_1
        53.3%
        47%
        38.3
        G454_Watkins07_Unvax_rh2995_B_D7_RNA1_Lib1_GL104_S92_R2_001_val_2
        56.0%
        48%
        38.3
        G455_Watkins07_AVR_rh3033_B_D7-SIV_RNA1_Lib1_GL105_S99_R1_001_val_1
        61.8%
        48%
        49.2
        G455_Watkins07_AVR_rh3033_B_D7-SIV_RNA1_Lib1_GL105_S99_R2_001_val_2
        59.3%
        48%
        49.2

        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Counts

        Sequence counts for each sample. Duplicate read counts are an estimate only.

        This plot show the total number of reads, broken down into unique and duplicate if possible (only more recent versions of FastQC give duplicate info).

        You can read more about duplicate calculation in the FastQC documentation. A small part has been copied here for convenience:

        Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

        The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Quality Histograms

        The mean quality value across each base position in the read.

        To enable multiple samples to be plotted on the same graph, only the mean quality scores are plotted (unlike the box plots seen in FastQC reports).

        Taken from the FastQC help:

        The y-axis on the graph shows the quality scores. The higher the score, the better the base call. The background of the graph divides the y axis into very good quality calls (green), calls of reasonable quality (orange), and calls of poor quality (red). The quality of calls on most platforms will degrade as the run progresses, so it is common to see base calls falling into the orange area towards the end of a read.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality.

        From the FastQC help:

        The per sequence quality score report allows you to see if a subset of your sequences have universally low quality values. It is often the case that a subset of sequences will have universally poor quality, however these should represent only a small percentage of the total sequences.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called.

        To enable multiple samples to be shown in a single plot, the base composition data is shown as a heatmap. The colours represent the balance between the four bases: an even distribution should give an even muddy brown colour. Hover over the plot to see the percentage of the four bases under the cursor.

        To see the data as a line plot, as in the original FastQC graph, click on a sample track.

        From the FastQC help:

        Per Base Sequence Content plots out the proportion of each base position in a file for which each of the four normal DNA bases has been called.

        In a random library you would expect that there would be little to no difference between the different bases of a sequence run, so the lines in this plot should run parallel with each other. The relative amount of each base should reflect the overall amount of these bases in your genome, but in any case they should not be hugely imbalanced from each other.

        It's worth noting that some types of library will always produce biased sequence composition, normally at the start of the read. Libraries produced by priming using random hexamers (including nearly all RNA-Seq libraries) and those which were fragmented using transposases inherit an intrinsic bias in the positions at which reads start. This bias does not concern an absolute sequence, but instead provides enrichement of a number of different K-mers at the 5' end of the reads. Whilst this is a true technical bias, it isn't something which can be corrected by trimming and in most cases doesn't seem to adversely affect the downstream analysis.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content.

        From the FastQC help:

        This module measures the GC content across the whole length of each sequence in a file and compares it to a modelled normal distribution of GC content.

        In a normal random library you would expect to see a roughly normal distribution of GC content where the central peak corresponds to the overall GC content of the underlying genome. Since we don't know the the GC content of the genome the modal GC content is calculated from the observed data and used to build a reference distribution.

        An unusually shaped distribution could indicate a contaminated library or some other kinds of biased subset. A normal distribution which is shifted indicates some systematic bias which is independent of base position. If there is a systematic bias which creates a shifted normal distribution then this won't be flagged as an error by the module since it doesn't know what your genome's GC content should be.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Base N Content

        The percentage of base calls at each position for which an N was called.

        From the FastQC help:

        If a sequencer is unable to make a base call with sufficient confidence then it will normally substitute an N rather than a conventional base call. This graph shows the percentage of base calls at each position for which an N was called.

        It's not unusual to see a very low proportion of Ns appearing in a sequence, especially nearer the end of a sequence. However, if this proportion rises above a few percent it suggests that the analysis pipeline was unable to interpret the data well enough to make valid base calls.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Length Distribution

        The distribution of fragment sizes (read lengths) found. See the FastQC help

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Duplication Levels

        The relative level of duplication found for every sequence.

        From the FastQC Help:

        In a diverse library most sequences will occur only once in the final set. A low level of duplication may indicate a very high level of coverage of the target sequence, but a high level of duplication is more likely to indicate some kind of enrichment bias (eg PCR over amplification). This graph shows the degree of duplication for every sequence in a library: the relative number of sequences with different degrees of duplication.

        Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

        The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

        In a properly diverse library most sequences should fall into the far left of the plot in both the red and blue lines. A general level of enrichment, indicating broad oversequencing in the library will tend to flatten the lines, lowering the low end and generally raising other categories. More specific enrichments of subsets, or the presence of low complexity contaminants will tend to produce spikes towards the right of the plot.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Overrepresented sequences

        The total amount of overrepresented sequences found in each library.

        FastQC calculates and lists overrepresented sequences in FastQ files. It would not be possible to show this for all samples in a MultiQC report, so instead this plot shows the number of sequences categorized as over represented.

        Sometimes, a single sequence may account for a large number of reads in a dataset. To show this, the bars are split into two: the first shows the overrepresented reads that come from the single most common sequence. The second shows the total count from all remaining overrepresented sequences.

        From the FastQC Help:

        A normal high-throughput library will contain a diverse set of sequences, with no individual sequence making up a tiny fraction of the whole. Finding that a single sequence is very overrepresented in the set either means that it is highly biologically significant, or indicates that the library is contaminated, or not as diverse as you expected.

        FastQC lists all of the sequences which make up more than 0.1% of the total. To conserve memory only sequences which appear in the first 100,000 sequences are tracked to the end of the file. It is therefore possible that a sequence which is overrepresented but doesn't appear at the start of the file for some reason could be missed by this module.

        490 samples had less than 1% of reads made up of overrepresented sequences

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position.

        Note that only samples with ≥ 0.1% adapter contamination are shown.

        There may be several lines per sample, as one is shown for each adapter detected in the file.

        From the FastQC Help:

        The plot shows a cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. Once a sequence has been seen in a read it is counted as being present right through to the end of the read so the percentages you see will only increase as the read length goes on.

        No samples found with any adapter contamination > 0.1%

        Status Checks

        Status for each FastQC section showing whether results seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

        FastQC assigns a status for each section of the report. These give a quick evaluation of whether the results of the analysis seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

        It is important to stress that although the analysis results appear to give a pass/fail result, these evaluations must be taken in the context of what you expect from your library. A 'normal' sample as far as FastQC is concerned is random and diverse. Some experiments may be expected to produce libraries which are biased in particular ways. You should treat the summary evaluations therefore as pointers to where you should concentrate your attention and understand why your library may not look random and diverse.

        Specific guidance on how to interpret the output of each module can be found in the relevant report section, or in the FastQC help.

        In this heatmap, we summarise all of these into a single heatmap for a quick overview. Note that not all FastQC sections have plots in MultiQC reports, but all status checks are shown in this heatmap.

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